The Centre for Ecosystem Science partners with a range of institutions at both the academic and strategic level.
- Nura Gili Indigenous Program Unit
- The Australian Museum
- The Taronga Conservation Society
- The Centre for Excellence in Environmental Decisions
- The School of Biological Sciences, Ecology & Environmental Science, The University of Adelaide
- The Office of Environment and Heritage
- Joint Remote Sensing Research Program, The University of Queensland
- Department of Science, Information and Technology, QLD
- Geoscience Australia
- Global Environment Faculty
- Secretariat of the Pacific Regional Environment Programme
- International Centre for Trade and Sustainable Development
- United Nations University
- Arid Recovery
- Australian Wildlife Conservancy
- Australian Nuclear Science and Technology Organisation
- The Commonwealth Scientific and Industrial Research Organisation
- The Murray-Darling Basin Authority
- Komodo Survival Progam
